A contigs has a self-chimera when a large segment of this contig is present several times in sequence. This analysis is processed with blast.
Aligns Benchmarking Universal Single-Copy Orthologs (BUSCO) from a specific lineage on contigs. Provided intuitive metrics describe the assembly completeness due to the fact that these orthologs are expected to be found in the genome of species from this lineage. These metrics are provided by BUSCO (details).
Aligns the Lepisosteus oculatus reference proteins on contigs. Only the best hits with an identity of 80% and a coverage 80% are retained.
Click on a venn diagram figure to display the protein elements:
Click on a venn diagram figure to display the gene elements:
The score is designed so that an increased score is very likely to correspond to an assembly that is more biologically accurate (0 is the minimum possible score, while 1.0 is the maximum). The score is calculated as the geometric mean of all contig scores multiplied by the proportion of input reads that provide positive support for the assembly.
This score is produced by transrate (details).
Each contig is assigned a score by measuring how well it is supported by read evidence (0 is the minimum possible score, while 1.0 is the maximum.).. The contig score can be thought of as measure of whether the contig is an accurate, complete, non-redundant representation of a transcript that was present in the sequenced sample.
This score is produced by transrate (details).